Blood is one of the most used biofluids in metabolomics studies, and the serum and plasma fractions are routinely used as a proxy for blood itself. Here we investigated the association networks of an array of 29 metabolites identified and quantified via NMR in the plasma and serum samples of two cohorts of similar to 1000 healthy blood, donors each. A second study of 377 individuals was used to extract plasma and serum samples from the same individual on which a set of 122 metabolites were detected and quantified using FIA MS/MS. Four different inference algorithms (ARANCE, CLR, CORR, and PCLRC) were used to obtain consensus networks. The plasma and serum networks obtained from different studies showed different topological properties with the serum network being more connected than the plasma network. On a global level, metabolite association networks from plasma and serum fractions obtained from the same blood sample of healthy people show similar topologies, and at a local level, some differences arise like in the case of amino acids.

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling / Suarez-diez, Maria; Adam, Jonathan; Adamski, Jerzy; Chasapi, Styliani A.; Luchinat, Claudio; Peters, Annette; Prehn, Cornelia; Santucci, Claudio; Spyridonidis, Alexandros; Spyroulias, Georgios A.; Tenori, Leonardo; Wang-sattler, Rui; Saccenti, Edoardo. - In: JOURNAL OF PROTEOME RESEARCH. - ISSN 1535-3893. - STAMPA. - 16:(2017), pp. 2547-2559. [10.1021/acs.jproteome.7b00106]

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling

Luchinat, Claudio;Santucci, Claudio;Tenori, Leonardo;
2017

Abstract

Blood is one of the most used biofluids in metabolomics studies, and the serum and plasma fractions are routinely used as a proxy for blood itself. Here we investigated the association networks of an array of 29 metabolites identified and quantified via NMR in the plasma and serum samples of two cohorts of similar to 1000 healthy blood, donors each. A second study of 377 individuals was used to extract plasma and serum samples from the same individual on which a set of 122 metabolites were detected and quantified using FIA MS/MS. Four different inference algorithms (ARANCE, CLR, CORR, and PCLRC) were used to obtain consensus networks. The plasma and serum networks obtained from different studies showed different topological properties with the serum network being more connected than the plasma network. On a global level, metabolite association networks from plasma and serum fractions obtained from the same blood sample of healthy people show similar topologies, and at a local level, some differences arise like in the case of amino acids.
2017
16
2547
2559
Suarez-diez, Maria; Adam, Jonathan; Adamski, Jerzy; Chasapi, Styliani A.; Luchinat, Claudio; Peters, Annette; Prehn, Cornelia; Santucci, Claudio; Spyridonidis, Alexandros; Spyroulias, Georgios A.; Tenori, Leonardo; Wang-sattler, Rui; Saccenti, Edoardo
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Utilizza questo identificatore per citare o creare un link a questa risorsa: https://hdl.handle.net/2158/1101981
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