We present a software pipeline for high throughput stitching and processing of highresolution tomographies of whole mouse brains. We then employ machine learning techniques for automatic segmentation and classification of neurons in the acquired datasets.
Software tools for efficient processing of high-resolution 3D images of macroscopic brain samples / Mazzamuto G.; Silvestri L.; Costantini I.; Orsini F.; Roffilli M.; Frasconi P.; Sacconi L.; Pavone F.S.. - ELETTRONICO. - 2018:(2018), pp. JTh3A.64-0. (Intervento presentato al convegno Clinical and Translational Biophotonics, TRANSLATIONAL 2018 tenutosi a usa nel 2018) [10.1364/TRANSLATIONAL.2018.JTh3A.64].
Software tools for efficient processing of high-resolution 3D images of macroscopic brain samples
Mazzamuto G.;Silvestri L.;Costantini I.;Orsini F.;Frasconi P.;Pavone F. S.
2018
Abstract
We present a software pipeline for high throughput stitching and processing of highresolution tomographies of whole mouse brains. We then employ machine learning techniques for automatic segmentation and classification of neurons in the acquired datasets.
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